- de Carvalho M.R. & M.C. Ebach 2009. Dearth of the specialist, rise of the machinist. History and Philosophy of the Life Sciences 31:467-470.
- Ebach, M.C. 2009. Goethe to Linneaus. In (eds. Wheeler, Q.D. & Knapp, S.) Letters to Linnaeus. Linnean Society, London, pp. 81-83.
- Ebach, M.C. & Williams, D.M. 2009. How objective is a definition in the subspecies debate? Nature 457:785.
- Ebach, M.C. 2009. Phylogeny. In: Brix J.H. (ed.) Encyclopedia of Time. Sage Publications Inc., Thousand Oaks, CA.
- Ebach, M.C. & Wheeler, Q.D. 2009. Cybertaxonomy. In: Brix J.H. (ed.) Encyclopedia of Time. Sage Publications Inc., Thousand Oaks, CA, pp. 252-260.
- Karthick B., Toyoda, K., Ramachandra, TV., & Williams, DM. 2009. A note on the identity of Ceratoneis iyengarii Gonzalves & Gandhi (Fragilariophyceae, Bacillariophyta). Diatom Research 24: 233-236.
- Li, Y., Williams, DM., Metzeltin, D., Kociolek, J.P., & Gong, Z. 2010. Tibetiella pulchra gen. nov. et sp. nov., a new freshwater epilithic diatom (Bacillariophyta) from River Nujiang in Tibet, China. Journal of Phycology Published Online: Dec 11 2009; DOI: 10.1111/j.1529-8817.2009.00776.x
- McNamara, K.J., Feist, R. & Ebach, M.C. 2009. Patterns of evolution and extinction in the last harpetid trilobites during the Late Devonian (Frasnian). Palaeontology, 52:11-33.
- Parenti, L.R. & Ebach, M.C. 2009. Comparative Biogeography: Discovering and Classifying Biogeographical Patterns of a Dynamic Earth. University of California Press, Berkeley.
- Parenti, L.R., Viloria, Á.L., Ebach, M.C. & Morrone, J.J. 2009. On the International Code of Area Nomenclature (ICAN): a Reply. Journal of Biogeography, 36:1619-1621.
- Stachura-Suchoples. K& Williams, DM. 2009. Description of Conticribra tricircularis, a new genus and species of Thalassiosirales, with a discussion on its relationship to other continuous cribra species of Thalassiosira Cleve (Bacillariophyta) and its freshwater origin. European Journal of Phycology 44: 477-486.
- Stachura-Suchoples, K., Williams, DM. & Jahn, R. 2009. On extinct, freshwater taxa in the genus Thalassiosira with observations on Thalassiosira species from Pliocene deposit in Oregon, U.S.A. Diatomededelingen 33: 111-113.
- Toyoda, K., Tanaka, J. & Williams, DM. 2009. A new brackish water diatom, Achnanthes secretitaeniata sp. nov. from Japan. Journal of Japanese Botany 84: 19-26.
- Tuji, A., Williams, DM., Sims, P.A. & Tanimura, Y. 2009. An Illustrated Catalogue of Type Specimens from the H.M.S. Challenger Voyage in Castracane's Slide Collection in the Natural History Museum, London. JOINT HAECKEL and EHRENBERG PROJECT: Reexamination of the Haeckel and Ehrenberg Microfossil Collectionsas a Historical and Scientific Legacy, edited by Y. Tanimura and Y. Aita, pp. 7-11. National Museum of Nature and Science Monographs, No. 40, Tokyo 2009.
- Williams, D.M. 2009. 'Araphid' Diatom Classification and The 'Absolute Standard'. Acta Botanica Croatica 68: 455-463.
- Williams, DM, Chudaev, DA, Lomonosov, MV, & Gololobova, MA. 2009. Punctastriata glubokoensis spec. nov., a new species of 'Fragilarioid' diatom from lake Glubokoe, Russia. Diatom Research 24: 479-485.
- Williams D.M. & Ebach, M.C. 2009. What, exactly, is cladistics? Re-writing the history of systematics and biogeography. Acta Biotheoretica, 57:249–268.
- Williams, DM. & Reid, G. 2009. New Species in the Genus Colliculoamphora. Williams & Reid with Commentary on Species Concepts in Diatom Taxonomy.Beihefte zur Nova Hedwigia (Eugene Stoermer Festschrift) 135: 185-200.
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